In sequence alignment by BLAST, each word from query sequence is typically ____

Question

In sequence alignment by BLAST, each word from query sequence is typically _______ residues for protein sequences and _______ residues for DNA sequences.

Options:

A . ten, eleven

B . three, three

C . three, eleven

D . three, ten

Answer: Option C
Answer: (c).three, eleven

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Question 1. In sequence alignment by BLAST, the second step is to search a sequence database for the occurrence of these words.....

Question 2. A recent improvement in the implementation of BLAST is the ability to provide gapped alignment.....

Question 3. The final step involves pairwise alignment by extending from the words in both directions while counting the alignment s....while counting the alignment score using the same substitution matrix.

Question 4. Which of the following is not correct about FASTA?....

Question 5. The first step in FASTA alignment id to arrange the sequences in matrices’ rows and columns in order to be analyzed.....

Question 6. The positional difference for each word between the two sequences is obtained by ________ the position of the ______ seq....of the _______ sequence and is expressed as the offset.

Question 7. In FASTA, neighboring high-scoring segments along the same diagonal are selected and joined to form a single alignment.....diagonal are selected and joined to form a single alignment.

Question 8. The second step in FASTA is to narrow down the high similarity regions between the two sequences.....

Question 9. The last step is to perform a statistical evaluation of the final alignment as in BLAST, which produces the E-value.....

Question 10. FASTX, which compares a protein query sequence to a translated DNA database.....

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